Select celltypes to keep or exclude in the analysis
select_celltypes(sce_object, celltypes, column = "Phenotype", keep = TRUE)
| sce_object | SingleCellExperiment object generated by format_image_to_sce |
|---|---|
| celltypes | Vector of celltypes of keep or exclude |
| column | String the name of the column that the celltypes are under |
| keep | TRUE if vector of phenotypes are the cells that are going to be kept, FALSE if they are to be removed |
A SingleCellExperiment object is returned