SPIAT - Spatial Image Analysis of Tissues

R package for the analysis of OPAL multiplex immunohistochemistry images.

Installation

# install.packages('devtools')
devtools::install_github("cancer-evolution/SPIAT")

Vignette

The vignette with an overview of the package can be accessed from the top Menu under Articles.

Authors:

Tianpei Yang, Volkan Ozcoban, Anu Pasam, Nikolce Kocovski, Angela Pizzolla, Yu-Kuan Huang, Greg Bass, Simon P. Keam, Paul J. Neeson, Shahneen K. Sandhu, David L. Goode, Anna S. Trigos

Pre-print available: SPIAT: An R package for the Spatial Image Analysis of Cells in Tissues https://www.biorxiv.org/content/10.1101/2020.05.28.122614v1