plot_distance_heatmap

Source: R/plot_distance_heatmap.R

Takes the output of cell_distances and plot the distances as a heatmap

plot_distance_heatmap(phenotype_distances_result, metric = "mean")

Arguments

phenotype_distances_result

Dataframe output from calculate_distances_between_phenotypes
metric

Metric to be plotted. One of "mean", "std.dev" or "median".

Value

A plot is returned

Examples

summary_distances <- calculate_summary_distances_between_cell_types(SPIAT::formatted_image)

#> [1] "All markers are used in pair-wise distance calculation: "
#> [1] "OTHER"   "AMACR"   "CD3,CD4" "CD3,CD8" "CD3"     "PDL-1"  
plot_distance_heatmap(summary_distances)