plot_cell_proportions

Source: R/plot_cell_percentages.R

Plots cells proportions as barplots

plot_cell_percentages(
  cell_proportions,
  tumour_marker = NULL,
  cellprop_colname = "Proportion_name"
)

Arguments

cell_proportions

Output from calculate_cell_proportions
tumour_marker

Tumour marker to exclude if needed
cellprop_colname

Column to use for y axis names. Default is "Proportion_name"

Value

A plot is returned

Examples

p_cells <- calculate_cell_proportions(SPIAT::formatted_image, reference_celltypes=c("Total", "CD3"))
plot_cell_percentages(p_cells)