Produces a scatter plot of the cells in the tissue. Cells are coloured categorically by specified column. Cells not part of the celltypes of interest will be coloured "lightgrey"
plot_cell_basic( sce_object, types_of_interest, colour_vector, column, cex = 0.4 )
| sce_object | Singlecellexperiment object in the form of the output of format_image_to_sce |
|---|---|
| types_of_interest | Vector of cell cell types to be coloured |
| colour_vector | Vector specifying the colours of each cell phenotype |
| column | String specifying the column to be coloured |
| cex | Number specifying the size of the points on the plot. Default is 0.4. |
A plot is returned