mixing_score_multiple

Source: R/mixing_score_multiple.R

Produces a list of dataframes that contains all the mixing scores respective to each reference cell. Each dataframe is corresponding to one reference cell type

mixing_score_multiple(
  sce_object,
  reference_marker,
  target_marker,
  radius = 20,
  column = "Phenotype"
)

Arguments

sce_object

SingleCellExperiment object in the form of the output of format_image_to_sce
reference_marker

Markers to be used as the reference cells.
target_marker

Markers to be used as the target markers. The function will ignore instances where reference marker is the same as target marker.
radius

(OPTIONAL) The maximum radius around a reference marker for another cell to be considered an interaction.
column

String specifying the column where the selected cell types are from

Value

A list of dataframes