Generates stacked 3D surface plots showing normalized intensity level of specified markers.
marker_surface_plot_stack( sce_object, num_splits, markers_to_plot, sep = 1, x_position_min = NULL, x_position_max = NULL, y_position_min = NULL, y_position_max = NULL )
| sce_object | SingleCellExperiment object in the form of the output of format_image_to_sce |
|---|---|
| num_splits | Integer specifying the number of splits on the image, higher splits equal to higher resolution. Recommendation: 10-100 |
| markers_to_plot | Vector of marker names for plotting |
| sep | Integer specifying the distance separation between each surface plot. We recommend values in the 1-2 range. |
| x_position_min | Integer specifying the minimum x boundary to be splitted |
| x_position_max | Integer specifying the maximum x boundary to be splitted |
| y_position_min | Integer specifying the minimum y boundary to be splitted |
| y_position_max | Integer specifying the maximum y boundary to be splitted |
A plot is returned