Formats an sce object into a ppp object which has the x,y coordinates, phenotypes as markers window specifies the range of x and y coordinates

format_sce_to_ppp(sce_object, window_pol = F)

Arguments

sce_object

SingleCellExperiment object in the form of the output of format_image_to_sce

window_pol

Optional Boolean Specifying if the window is polygon