composition_of_clusters_and_communities

Returns a dataframe which contains the percentages of cells with a specific marker within each cluster and the number of cells in the cluster.

composition_of_clusters_and_communities(
  formatted_data_with_clusters,
  type_of_aggregate,
  column
)

Arguments

formatted_data_with_clusters	- a dataframe output from generate_clusters
type_of_aggregate	Cluster or Community
column	Column with cell types

Value

A data.frame is returned

Examples

communities <- identify_cell_communities(SPIAT::formatted_image, radius=100)
communities_vis <- composition_of_clusters_and_communities(communities, type_of_aggregate = "Community", column="Phenotype")