calculate_minimum_distances

Source: R/calculate_minimum_distances.R

Returns the distance of the closest cell of a specific type from each reference cell

calculate_minimum_distances(
  sce_object,
  column = "Phenotype",
  cell_types_of_interest = NULL
)

Arguments

sce_object

SingleCellExperiment object in the form of the output of format_image_to_sce
column

Column of cells to choose the phenotype from (e.g. Cell.Type, Cell.Type2, etc)
cell_types_of_interest

Vector of marker combinations to consider is FALSE

Value

A data.frame is returned